- Basic information
- CohesinDB ID: CDBP00415717
- Locus: chr21-27419173-27419550
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Data sourse: GSE206145
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Cell type: RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 86%,
"5_TxWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, PPARG, FOXA2, ZNF263, MYCN, BRF2, KDM4C, ZFX, POU4F2, XBP1, SS18, ZBTB48, WT1, NME2, SIRT3, FOXA1, SOX2, HOXB13, SMARCC1, ERG, YY1, RELA, ZNF384, RUNX2, EZH1, BRG1, ONECUT1, FOXP2, RAD21, SP140, TAL1, ZNF143, MITF, HNRNPH1, MED1, ARNTL, TLE3, NR3C1, CEBPB, TEAD1, CREB1, ESR1, OCA2, CTCF, MAFK, GSPT2, AR, PAX3-FOXO1, HDAC2, GATA2, NOTCH3, BRD4, NR1H3, MAZ, SMC3, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops