- Basic information
- CohesinDB ID: CDBP00415720
- Locus: chr21-27429416-27430640
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Data sourse: ENCSR230ZWH, ENCSR917QNE, GSE206145, GSE206145-NatGen2015, GSE138105, GSE165895
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Cell type: RPE, Fibroblast, SLK, Liver, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 72%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PPARG, FOXA2, SIN3A, HNF1A, DUX4, FOXA1, HOXB13, SMARCC1, ERG, YY1, RELA, MEF2A, JUNB, RUNX2, NFIC, RAD21, HIF1A, RXRA, GATA3, GABPA, TAL1, PBX3, NKX3-1, FOS, MED1, TLE3, NR3C1, NR2F2, NEUROG2, PIAS1, ESR1, CTCF, TCF12, MAFK, SP1, EP300, JUN, BAF155, AR, SPI1, GATA2, REST, ARID1A, BRD4, JUND, FOXP1, TEAD4, FOSL2
- Target gene symbol (double-evidenced CRMs): ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops