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Basic information

CohesinDB ID: CDBP00415723

Locus: chr21-27448270-27449349

Data sourse: GSE138405, GSE101921, ENCSR230ZWH, ENCSR917QNE

Cell type: Liver, Hela-Kyoto, HCAEC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: Rad21,SA2,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 36% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 87%, "7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXA2, NKX2-2, POU4F2, GTF2B, HOXB13, PAX6, RELA, JUNB, ETS1, SMARCA4, RAD21, KLF12, RXRA, STAT3, TAL1, MAFB, MAX, NKX3-1, FOS, NR2F2, CEBPD, OCA2, BRD2, JUN, MAFK, SP1, CTCF, AR, GATA2, REST, EGR1, FLI1, BRD4, SMC1, PDX1

Target gene symbol (double-evidenced CRMs): ADAMTS1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000154734,

Tools:

Assay

refGene

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Cohesin site CDBP00415723

CDBP00415723 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00415723

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