- Basic information
- CohesinDB ID: CDBP00415767
- Locus: chr21-27647482-27650467
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Data sourse: ENCSR000EFJ, ENCSR000HPG, GSE206145, GSE206145-NatGen2015, GSE68388, GSE165895
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Cell type: RPE, Fibroblast, IMR-90, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 73%,
"7_Enh": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, ZNF283, PGR, CEBPA, FOXA2, BRD3, NME2, DUX4, FOXA1, HOXB13, HNF4G, ERG, HOXC5, RELA, KDM1A, TFAP4, OGG1, RUNX2, NFIC, GATA4, GRHL3, HIF1A, PBX4, DAXX, ATF2, PRDM9, GATA3, TAL1, MAX, STAT3, NKX3-1, TP63, RCOR1, MED1, ARNTL, TLE3, NR3C1, CEBPG, CEBPB, ESRRA, ZNF750, KLF4, PIAS1, GRHL2, NFKB1, JUN, BAF155, BHLHE40, AR, GATA2, ARID1A, ASH2L, BRD4, JUND, FOXP1, E2F1, ZNF92, TFAP2C
- Target gene symbol (double-evidenced CRMs): ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops