- Basic information
- CohesinDB ID: CDBP00415846
- Locus: chr21-28025094-28025504
-
Data sourse: GSE206145-NatGen2015
-
Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 98%,
"9_Het": 1%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): ADAMTS1,LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000225298,
- Related loop:
chr21:13275000-13300000~~chr21:28000000-28025000,
chr21:13300000-13325000~~chr21:28000000-28025000,
chr21:26725000-26750000~~chr21:28025000-28050000,
chr21:26750000-26775000~~chr21:28025000-28050000,
chr21:26825000-26850000~~chr21:28025000-28050000,
chr21:26850000-26875000~~chr21:28025000-28050000,
chr21:27550000-27575000~~chr21:28025000-28050000,
chr21:27700000-27725000~~chr21:28025000-28050000,
chr21:27725000-27750000~~chr21:28025000-28050000,
chr21:27750000-27775000~~chr21:28025000-28050000,
chr21:27825000-27850000~~chr21:28025000-28050000,
chr21:28017763-28020776~~chr21:28192629-28193898,
chr21:28017763-28020776~~chr21:28333968-28338137,
chr21:28018790-28020175~~chr21:28744431-28746621,
chr21:28018798-28020167~~chr21:28741954-28743601,
chr21:28018816-28020167~~chr21:28744361-28746655,
chr21:28025000-28050000~~chr21:28725000-28750000,