- Basic information
- CohesinDB ID: CDBP00415847
- Locus: chr21-28042682-28043085
-
Data sourse: GSE206145
-
Cell type: RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 99%,
"9_Het": 1%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): ADAMTS1,LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000225298,
- Related loop:
chr21:26725000-26750000~~chr21:28025000-28050000,
chr21:26750000-26775000~~chr21:28025000-28050000,
chr21:26825000-26850000~~chr21:28025000-28050000,
chr21:26850000-26875000~~chr21:28025000-28050000,
chr21:27550000-27575000~~chr21:28025000-28050000,
chr21:27700000-27725000~~chr21:28025000-28050000,
chr21:27725000-27750000~~chr21:28025000-28050000,
chr21:27750000-27775000~~chr21:28025000-28050000,
chr21:27825000-27850000~~chr21:28025000-28050000,
chr21:28025000-28050000~~chr21:28725000-28750000,