- Basic information
- CohesinDB ID: CDBP00415849
- Locus: chr21-28050232-28054706
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR917QNE, GSE139435, GSE93080, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, GSE130140, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, CUTLL1, Liver, GP5d, Transformed-RPE1, TC-32, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, HEKn, THP-1, Ishikawa, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, Ramos, GM19238, HeLa, CNCC-WT33iPSC, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 70% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.222
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CEBPB, BRG1, RAD21, STAG1, SMC1, SMC3, CTCF, STAG2
- Target gene symbol (double-evidenced CRMs): LTN1,ADAMTS1,LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000225298,
ENSG00000198862,
- Related loop:
chr21:25600000-25625000~~chr21:28050000-28075000,
chr21:25625000-25650000~~chr21:28050000-28075000,
chr21:26725000-26750000~~chr21:28025000-28050000,
chr21:26750000-26775000~~chr21:28025000-28050000,
chr21:26825000-26850000~~chr21:28025000-28050000,
chr21:26825000-26850000~~chr21:28050000-28075000,
chr21:26850000-26875000~~chr21:28025000-28050000,
chr21:26850000-26875000~~chr21:28050000-28075000,
chr21:27200000-27225000~~chr21:28050000-28075000,
chr21:27550000-27575000~~chr21:28025000-28050000,
chr21:27550000-27575000~~chr21:28050000-28075000,
chr21:27564022-27565753~~chr21:28050923-28052951,
chr21:27699913-27702170~~chr21:28051110-28052908,
chr21:27699952-27702148~~chr21:28050939-28053207,
chr21:27699963-27702208~~chr21:28050939-28052956,
chr21:27700000-27725000~~chr21:28025000-28050000,
chr21:27700000-27725000~~chr21:28050000-28075000,
chr21:27700282-27702347~~chr21:28051033-28052927,
chr21:27700287-27702114~~chr21:28050094-28052904,
chr21:27700325-27702096~~chr21:28051197-28052726,
chr21:27700355-27702199~~chr21:28051112-28052927,
chr21:27725000-27750000~~chr21:28025000-28050000,
chr21:27750000-27775000~~chr21:28025000-28050000,
chr21:27750000-27775000~~chr21:28050000-28075000,
chr21:27758254-27761457~~chr21:28051084-28053207,
chr21:27758344-27760729~~chr21:28050094-28052904,
chr21:27758367-27760680~~chr21:28051112-28052927,
chr21:27758380-27760590~~chr21:28051185-28052820,
chr21:27758494-27760671~~chr21:28050923-28052951,
chr21:27759289-27760526~~chr21:28051044-28052709,
chr21:27825000-27850000~~chr21:28025000-28050000,
chr21:28025000-28050000~~chr21:28725000-28750000,
chr21:28050000-28075000~~chr21:28225000-28250000,
chr21:28050000-28075000~~chr21:28300000-28325000,
chr21:28050000-28075000~~chr21:28325000-28350000,
chr21:28050000-28075000~~chr21:28500000-28525000,
chr21:28050000-28075000~~chr21:28525000-28550000,
chr21:28050000-28075000~~chr21:28725000-28750000,
chr21:28050000-28075000~~chr21:28925000-28950000,
chr21:28050094-28052904~~chr21:28744171-28746673,
chr21:28050923-28052951~~chr21:28744431-28746621,
chr21:28050939-28053207~~chr21:28335622-28338264,
chr21:28050939-28053207~~chr21:28744399-28746641,
chr21:28050942-28052908~~chr21:28744204-28746655,
chr21:28050985-28053261~~chr21:28744200-28746589,
chr21:28050991-28052838~~chr21:28521403-28523335,
chr21:28050991-28052838~~chr21:28744455-28746667,
chr21:28051032-28053224~~chr21:28335606-28338251,
chr21:28051084-28053207~~chr21:28334487-28338171,
chr21:28051112-28052922~~chr21:28744497-28746545,
chr21:28051112-28052927~~chr21:28335663-28338245,
chr21:28051112-28052927~~chr21:28521324-28523315,
chr21:28051112-28052927~~chr21:28741981-28743659,
chr21:28051112-28052927~~chr21:28744452-28746493,
chr21:28051170-28052632~~chr21:28744510-28746501,
chr21:28051197-28052726~~chr21:28744207-28746569,
chr21:28051210-28052762~~chr21:28744462-28746595,