- Basic information
- CohesinDB ID: CDBP00415856
- Locus: chr21-28067534-28068121
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 77%,
"5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, BRG1, FOXA1, ARNT
- Target gene symbol (double-evidenced CRMs): LTN1,LINC00113,ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000225298,
ENSG00000198862,
- Related loop:
chr21:25600000-25625000~~chr21:28050000-28075000,
chr21:25625000-25650000~~chr21:28050000-28075000,
chr21:26825000-26850000~~chr21:28050000-28075000,
chr21:26850000-26875000~~chr21:28050000-28075000,
chr21:27200000-27225000~~chr21:28050000-28075000,
chr21:27550000-27575000~~chr21:28050000-28075000,
chr21:27700000-27725000~~chr21:28050000-28075000,
chr21:27750000-27775000~~chr21:28050000-28075000,
chr21:28050000-28075000~~chr21:28225000-28250000,
chr21:28050000-28075000~~chr21:28300000-28325000,
chr21:28050000-28075000~~chr21:28325000-28350000,
chr21:28050000-28075000~~chr21:28500000-28525000,
chr21:28050000-28075000~~chr21:28525000-28550000,
chr21:28050000-28075000~~chr21:28725000-28750000,
chr21:28050000-28075000~~chr21:28925000-28950000,