- Basic information
- CohesinDB ID: CDBP00415857
- Locus: chr21-28068492-28070097
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE165895, ENCSR000HPG, ENCSR000BLY, GSE105028, GSE206145-NatGen2015, ENCSR000ECE, GSE62063, GSE206145, ENCSR000EHX, GSE83726, GSE116344, ENCSR917QNE
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Cell type: RPE, H1-hESC, Fibroblast, RH4, Ramos, H9-hESC, IMR-90, SK-N-SH, Liver, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: NIPBL,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 57%,
"7_Enh": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, E2F7, SOX2, XBP1, FOXA1, NFIC, CHD7, PAX5, MYOG, TEAD1, NFE2L2, LMO2, ESR1, HNF1B, PITX3, CTCF, TCF12, EP300, GATA6, E2F6, TEAD4, POU2F2, NANOG, POU5F1, MYCN, ERG, PAX6, ASCL1, MYC, RAD21, LHX2, RXRA, NFE2, ARNTL, NR3C1, CEBPB, EZH2, GATA2, SIX2, MYF5, RUNX1, BCL6, CEBPA, EZH2phosphoT487, SIN3A, SMAD3, SMARCC1, TWIST1, MEF2A, CREBBP, RUNX2, CDK6, BACH1, ATF2, PRDM9, HMGB2, PBX3, MED1, PIAS1, SETDB1, SP1, BCL11A, HNF4A, REST, POU2F3, ASH2L, BCOR, FOXP1, FOXA2, ZNF207, RBBP5, GTF2B, ZBTB33, KDM1A, YY1, NEUROD1, BRG1, ISL1, HIF1A, OTX2, GATA3, MAX, HAND2, CEBPG, NEUROG2, TP53, MYOD1, BHLHE40, AR, PAX3-FOXO1, TAF1, BRD4, SCRT1, JUND, TBX2, ZNF316
- Target gene symbol (double-evidenced CRMs): LTN1,LINC00113,ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000225298,
ENSG00000198862,
- Related loop:
chr21:25600000-25625000~~chr21:28050000-28075000,
chr21:25625000-25650000~~chr21:28050000-28075000,
chr21:26825000-26850000~~chr21:28050000-28075000,
chr21:26850000-26875000~~chr21:28050000-28075000,
chr21:27200000-27225000~~chr21:28050000-28075000,
chr21:27550000-27575000~~chr21:28050000-28075000,
chr21:27700000-27725000~~chr21:28050000-28075000,
chr21:27750000-27775000~~chr21:28050000-28075000,
chr21:28050000-28075000~~chr21:28225000-28250000,
chr21:28050000-28075000~~chr21:28300000-28325000,
chr21:28050000-28075000~~chr21:28325000-28350000,
chr21:28050000-28075000~~chr21:28500000-28525000,
chr21:28050000-28075000~~chr21:28525000-28550000,
chr21:28050000-28075000~~chr21:28725000-28750000,
chr21:28050000-28075000~~chr21:28925000-28950000,
chr21:28075000-28100000~~chr21:28225000-28250000,
chr21:28075000-28100000~~chr21:28300000-28325000,
chr21:28075000-28100000~~chr21:28325000-28350000,
chr21:28075000-28100000~~chr21:28500000-28525000,
chr21:28075000-28100000~~chr21:28700000-28725000,
chr21:28075000-28100000~~chr21:28725000-28750000,
chr21:28075000-28100000~~chr21:28925000-28950000,