- Basic information
- CohesinDB ID: CDBP00415900
- Locus: chr21-28217115-28217363
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Data sourse: ENCSR000BLY, GSE68388
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Cell type: HuCC-T1, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 85%,
"5_TxWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, FOXA2, SIN3A, POU4F2, SMAD3, FOXA1, HOXB13, HOXC5, RELA, JUNB, RUNX2, DAXX, PBX4, ARNT, TCF4, HIF1A, GRHL3, GABPA, STAT3, NKX3-1, FOS, HAND2, MED1, VDR, CDX2, NR3C1, CEBPB, ARNTL, PIAS1, TCF7L2, ESR1, NR1H2, OCA2, EBF3, JUN, TCF12, BAF155, EP300, AR, RXR, GATA2, NOTCH3, CTBP2, JUND, NCOR2, AHR
- Target gene symbol (double-evidenced CRMs): ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops