- Basic information
- CohesinDB ID: CDBP00415901
- Locus: chr21-28220723-28221224
-
Data sourse: GSE206145, GSE138105
-
Cell type: RPE, SLK
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 77%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, FOXO1, AR, NR3C1, PGR, ZNF384, RUNX2, NKX2-2, NFIC, TEAD1, TEAD4, ZSCAN21, DUX4, GATA3, USF2, ZNF440, SMARCC1, PBX3, TWIST1, PDX1
- Target gene symbol (double-evidenced CRMs): ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154734,
- Related loop:
chr21:15575000-15600000~~chr21:28200000-28225000,
chr21:26800000-26825000~~chr21:28225000-28250000,
chr21:26825000-26850000~~chr21:28200000-28225000,
chr21:26825000-26850000~~chr21:28225000-28250000,
chr21:26875000-26900000~~chr21:28225000-28250000,
chr21:27300000-27325000~~chr21:28200000-28225000,
chr21:27300000-27325000~~chr21:28225000-28250000,
chr21:27550000-27575000~~chr21:28225000-28250000,
chr21:27750000-27775000~~chr21:28225000-28250000,
chr21:27825000-27850000~~chr21:28225000-28250000,
chr21:28050000-28075000~~chr21:28225000-28250000,
chr21:28075000-28100000~~chr21:28225000-28250000,
chr21:28100000-28125000~~chr21:28225000-28250000,
chr21:28125000-28150000~~chr21:28225000-28250000,
chr21:28200000-28225000~~chr21:28300000-28325000,
chr21:28200000-28225000~~chr21:28725000-28750000,
chr21:28225000-28250000~~chr21:28325000-28350000,
chr21:28225000-28250000~~chr21:28375000-28400000,
chr21:28225000-28250000~~chr21:28425000-28450000,
chr21:28225000-28250000~~chr21:28450000-28475000,
chr21:28225000-28250000~~chr21:28525000-28550000,
chr21:28225000-28250000~~chr21:28625000-28650000,
chr21:28225000-28250000~~chr21:28650000-28675000,
chr21:28225000-28250000~~chr21:28725000-28750000,
chr21:28225000-28250000~~chr21:28800000-28825000,