Browse_each

Basic information

CohesinDB ID: CDBP00415904

Locus: chr21-28234195-28235962

Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, ENCSR000BLY, GSE105028, GSE73207, GSE103477, GSE111537, GSE131606, GSE108869, GSE25021, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE67783, GSE86191, GSE76893, GSE101921, GSE135093, GSE206145-NatGen2015, GSE120943, ENCSR703TNG, GSE106870, GSE116344, GSE98367, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR000EHX, GSE97394, GSE55407, ENCSR000BTQ, ENCSR167MTG, ENCSR000HPG, GSE111913, ENCSR054FKH, ENCSR000EDE, GSE68388, GSE83726, GSE50893, ENCSR000ECS, GSE131577

Cell type: MDM, RH4, CVB-hiPSC, CVI-hiPSC, Liver, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, Ishikawa, HeLa-S3, IMR-90, DKO, H1-hESC, Monocytes, TF-1, GM2588, SK-N-SH, RT-112, THP-1, Macrophage, HUES64, MCF-7, HCT-116, HL-60, Hep-G2, OCI-AML-3, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 20% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.667

Subunit: SA1,Rad21,SMC1,SA2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 35% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 67%, "5_TxWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: TRIM28, ZFX

Target gene symbol (double-evidenced CRMs): LINC00113,ADAMTS1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 10

Related genes and loops

Related gene: ENSG00000154734, ENSG00000225298,

eachgene

Deatailed information for cohesin site CDBP00415904