- Basic information
- CohesinDB ID: CDBP00415905
- Locus: chr21-28237523-28237929
-
Data sourse: GSE206145-NatGen2015, ENCSR230ZWH
-
Cell type: Liver, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 79%,
"5_TxWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, REST, CEBPA, XBP1, GRHL3, HLF, HOXB13
- Target gene symbol (double-evidenced CRMs): LINC00113,ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000225298,
- Related loop:
chr21:26800000-26825000~~chr21:28225000-28250000,
chr21:26825000-26850000~~chr21:28225000-28250000,
chr21:26875000-26900000~~chr21:28225000-28250000,
chr21:27300000-27325000~~chr21:28225000-28250000,
chr21:27550000-27575000~~chr21:28225000-28250000,
chr21:27750000-27775000~~chr21:28225000-28250000,
chr21:27825000-27850000~~chr21:28225000-28250000,
chr21:28050000-28075000~~chr21:28225000-28250000,
chr21:28075000-28100000~~chr21:28225000-28250000,
chr21:28100000-28125000~~chr21:28225000-28250000,
chr21:28125000-28150000~~chr21:28225000-28250000,
chr21:28225000-28250000~~chr21:28325000-28350000,
chr21:28225000-28250000~~chr21:28375000-28400000,
chr21:28225000-28250000~~chr21:28425000-28450000,
chr21:28225000-28250000~~chr21:28450000-28475000,
chr21:28225000-28250000~~chr21:28525000-28550000,
chr21:28225000-28250000~~chr21:28625000-28650000,
chr21:28225000-28250000~~chr21:28650000-28675000,
chr21:28225000-28250000~~chr21:28725000-28750000,
chr21:28225000-28250000~~chr21:28800000-28825000,