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Basic information

CohesinDB ID: CDBP00415906

Locus: chr21-28239422-28239738

Data sourse: ENCSR230ZWH, ENCSR000EHX, ENCSR917QNE

Cell type: Liver, SK-N-SH

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 35% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 74%, "7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, FOXO1, PGR, PPARG, FOXA2, POU5F1, SIN3A, NME2, MAFF, FOXA1, FOXF1, HOXB13, HNF4G, ERG, RELA, GATA4, GR, RAD21, ARNT, HIF1A, RXRA, GABPA, MAX, TP63, MED1, TLE3, NR3C1, ZNF750, NR2F2, TEAD1, CREB1, PIAS1, NEUROG2, ESR1, EBF3, CTCF, MAFK, BAF155, SP1, AR, GATA2, EGLN2, POU2F3, BRD4, FOXP1, FOSL2

Target gene symbol (double-evidenced CRMs): LINC00113,ADAMTS1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000154734, ENSG00000225298,

eachgene

Deatailed information for cohesin site CDBP00415906