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Basic information

CohesinDB ID: CDBP00415908

Locus: chr21-28247181-28248074

Data sourse: ENCSR230ZWH, ENCSR917QNE

Cell type: Liver

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 35% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 92%, "5_TxWk": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXA2, NKX2-2, CEBPA, HMG20A, TOP2A, HNF1A, ZSCAN16, FOXA1, ZBTB33, HOXB13, ERG, YY1, RELA, ATF3, ONECUT1, HOMEZ, RAD21, DAXX, RXRA, STAT3, MAX, MAFB, NKX3-1, TLE3, KLF4, CEBPB, TRIM28, KLF6, PIAS1, ESR1, HNF1B, GRHL2, PHOX2B, ELF3, CTCF, SP1, BAF155, MIXL1, HNF4A, AR, GATA6, IRF1, REST, ARID1A, GATA2, ASH2L, NCOR1, JUND, FOXP1, CLOCK, GATAD2A, PDX1

Target gene symbol (double-evidenced CRMs): LINC00113,ADAMTS1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 4

Related genes and loops

Related gene: ENSG00000154734, ENSG00000225298,

eachgene

Deatailed information for cohesin site CDBP00415908