- Basic information
- CohesinDB ID: CDBP00415920
- Locus: chr21-28311303-28312111
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 87%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SOX2, NME2, XBP1, HNF1A, FOXA1, CHD7, PRDM1, MITF, HDAC3, TEAD1, ETV1, SNAI2, HNF1B, OCA2, JUN, CTCF, BAF155, GATA6, SMC1, PDX1, TFAP2C, NANOG, POU5F1, TOP2A, ZNF778, ERF, ZNF205, BAHD1, HNF4G, HOXC5, ERG, ETS1, MYC, SMARCA4, GRHL3, GABPA, STAT3, NKX3-1, RCOR1, ARNTL, NR3C1, CEBPB, ZNF750, CREB1, SPI1, HDAC2, GATA2, RUNX1, NKX2-2, SMAD3, ERG3, SMARCC1, ZNF384, CDK6, GATA4, GR, PBX4, DAXX, SOX11, ATF2, PBX3, FOS, PIAS1, ZNF136, SETDB1, MAFK, USF1, ARID1A, ZBTB7A, ASH2L, FOXP1, FOXA2, ZSCAN16, GTF2B, MAFF, FOXF1, HOXB13, RELA, JUNB, BRG1, ISL1, OTX2, GATA3, TAL1, TLE3, KDM5B, NFKB1, ELF3, PAX3-FOXO1, AR, JUND, BRD4, ZNF316
- Target gene symbol (double-evidenced CRMs): ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops