- Basic information
- CohesinDB ID: CDBP00415924
- Locus: chr21-28324455-28324516
-
Data sourse: GSE120943
-
Cell type: Monocytes
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 89%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, NANOG, MAFG, ZNF207, POU5F1, SOX2, XBP1, MAFF, SMAD3, JUN, FOXA1, HOXB13, ERG, KDM1A, RELA, USP7, JUNB, NFIC, EOMES, BRG1, RAD21, TOP1, CHD7, ARNT, MORC2, ATF2, STAT3, FOXM1, MAX, NKX3-1, FOS, LEF1, MED1, TLE3, KLF4, CEBPB, NR3C1, CREB1, PIAS1, ETV1, EZH2, SNAI2, C11orf30, SETDB1, NFKB1, T, TCF12, USF1, BAF155, MAFK, EP300, NIPBL, AR, CTCF, SP1, HDAC2, GATA2, ARID1A, E2F6, NOTCH3, BRD4, CTBP2, BCOR, FOXP1, JUND, SCRT1, TEAD4, ZNF316
- Target gene symbol (double-evidenced CRMs): ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000154734,
- Related loop:
chr21:25600000-25625000~~chr21:28325000-28350000,
chr21:26750000-26775000~~chr21:28325000-28350000,
chr21:26825000-26850000~~chr21:28325000-28350000,
chr21:26850000-26875000~~chr21:28300000-28325000,
chr21:26850000-26875000~~chr21:28325000-28350000,
chr21:26900000-26925000~~chr21:28325000-28350000,
chr21:26950000-26975000~~chr21:28325000-28350000,
chr21:27050000-27075000~~chr21:28325000-28350000,
chr21:27100000-27125000~~chr21:28325000-28350000,
chr21:27175000-27200000~~chr21:28325000-28350000,
chr21:27200000-27225000~~chr21:28325000-28350000,
chr21:27250000-27275000~~chr21:28325000-28350000,
chr21:27300000-27325000~~chr21:28325000-28350000,
chr21:27350000-27375000~~chr21:28325000-28350000,
chr21:27450000-27475000~~chr21:28325000-28350000,
chr21:27475000-27500000~~chr21:28325000-28350000,
chr21:27550000-27575000~~chr21:28325000-28350000,
chr21:27675000-27700000~~chr21:28325000-28350000,
chr21:27700000-27725000~~chr21:28325000-28350000,
chr21:27725000-27750000~~chr21:28325000-28350000,
chr21:27750000-27775000~~chr21:28325000-28350000,
chr21:27775000-27800000~~chr21:28325000-28350000,
chr21:27825000-27850000~~chr21:28325000-28350000,
chr21:28050000-28075000~~chr21:28300000-28325000,
chr21:28050000-28075000~~chr21:28325000-28350000,
chr21:28075000-28100000~~chr21:28300000-28325000,
chr21:28075000-28100000~~chr21:28325000-28350000,
chr21:28100000-28125000~~chr21:28300000-28325000,
chr21:28100000-28125000~~chr21:28325000-28350000,
chr21:28175000-28200000~~chr21:28325000-28350000,
chr21:28200000-28225000~~chr21:28300000-28325000,
chr21:28225000-28250000~~chr21:28325000-28350000,
chr21:28325000-28350000~~chr21:28425000-28450000,
chr21:28325000-28350000~~chr21:28500000-28525000,
chr21:28325000-28350000~~chr21:28525000-28550000,
chr21:28325000-28350000~~chr21:28575000-28600000,
chr21:28325000-28350000~~chr21:28625000-28650000,
chr21:28325000-28350000~~chr21:28725000-28750000,
chr21:28325000-28350000~~chr21:28900000-28925000,
chr21:28325000-28350000~~chr21:28925000-28950000,
chr21:28325000-28350000~~chr21:42850000-42875000,