- Basic information
- CohesinDB ID: CDBP00415968
- Locus: chr21-28501658-28501980
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783
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Cell type: RPE, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 99%,
"14_ReprPCWk": 1%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, PAX7, TRP47, CEBPB, OGG1, ARNT, ZBTB48, WT1, CBFB, FOXA1, SCRT1, HOXB13, ERG
- Target gene symbol (double-evidenced CRMs): ADAMTS1,LTN1,LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000225298,
ENSG00000198862,
- Related loop:
chr21:26825000-26850000~~chr21:28500000-28525000,
chr21:26850000-26875000~~chr21:28500000-28525000,
chr21:27700000-27725000~~chr21:28500000-28525000,
chr21:27750000-27775000~~chr21:28500000-28525000,
chr21:28050000-28075000~~chr21:28500000-28525000,
chr21:28075000-28100000~~chr21:28500000-28525000,
chr21:28100000-28125000~~chr21:28500000-28525000,
chr21:28325000-28350000~~chr21:28500000-28525000,
chr21:28350000-28375000~~chr21:28475000-28500000,
chr21:28350000-28375000~~chr21:28500000-28525000,
chr21:28500000-28525000~~chr21:28625000-28650000,
chr21:28500000-28525000~~chr21:28725000-28750000,
chr21:28500000-28525000~~chr21:28925000-28950000,