- Basic information
- CohesinDB ID: CDBP00415972
- Locus: chr21-28519958-28520245
-
Data sourse: GSE206145-NatGen2015
-
Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 76%,
"5_TxWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): LTN1,LINC00113,ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000225298,
ENSG00000198862,
- Related loop:
chr21:26825000-26850000~~chr21:28500000-28525000,
chr21:26825000-26850000~~chr21:28525000-28550000,
chr21:26850000-26875000~~chr21:28500000-28525000,
chr21:27550000-27575000~~chr21:28525000-28550000,
chr21:27700000-27725000~~chr21:28500000-28525000,
chr21:27750000-27775000~~chr21:28500000-28525000,
chr21:27750000-27775000~~chr21:28525000-28550000,
chr21:28050000-28075000~~chr21:28500000-28525000,
chr21:28050000-28075000~~chr21:28525000-28550000,
chr21:28050991-28052838~~chr21:28521403-28523335,
chr21:28051112-28052927~~chr21:28521324-28523315,
chr21:28075000-28100000~~chr21:28500000-28525000,
chr21:28100000-28125000~~chr21:28500000-28525000,
chr21:28225000-28250000~~chr21:28525000-28550000,
chr21:28325000-28350000~~chr21:28500000-28525000,
chr21:28325000-28350000~~chr21:28525000-28550000,
chr21:28334487-28338171~~chr21:28521160-28523346,
chr21:28338312-28339715~~chr21:28521324-28523315,
chr21:28350000-28375000~~chr21:28500000-28525000,
chr21:28500000-28525000~~chr21:28625000-28650000,
chr21:28500000-28525000~~chr21:28725000-28750000,
chr21:28500000-28525000~~chr21:28925000-28950000,
chr21:28516060-28518025~~chr21:28742005-28743432,
chr21:28516094-28518223~~chr21:28744204-28746655,
chr21:28516110-28518054~~chr21:28744361-28746655,
chr21:28516260-28517994~~chr21:28744214-28746632,
chr21:28516260-28517994~~chr21:28939420-28941341,
chr21:28516268-28518070~~chr21:28744329-28746608,
chr21:28516305-28518150~~chr21:28710604-28712266,
chr21:28516305-28518150~~chr21:28744396-28746610,
chr21:28516312-28518065~~chr21:28744462-28746595,
chr21:28516335-28518256~~chr21:28710721-28711970,
chr21:28516335-28518256~~chr21:28744250-28746679,
chr21:28516335-28518256~~chr21:28939349-28941136,
chr21:28516349-28517977~~chr21:28744171-28746673,
chr21:28516366-28517998~~chr21:28744241-28746558,
chr21:28516366-28518040~~chr21:28744325-28746663,
chr21:28516367-28517967~~chr21:28744528-28746609,
chr21:28516369-28518093~~chr21:28744334-28746652,
chr21:28516385-28518004~~chr21:28744246-28746649,
chr21:28516389-28518036~~chr21:28710702-28711996,
chr21:28516389-28518036~~chr21:28742004-28743407,
chr21:28516389-28518036~~chr21:28744431-28746621,
chr21:28516405-28518026~~chr21:28744207-28746569,
chr21:28516412-28518000~~chr21:28741981-28743659,
chr21:28516422-28518049~~chr21:28744175-28746644,
chr21:28516435-28517898~~chr21:28744281-28746569,
chr21:28516442-28517932~~chr21:28744495-28746431,
chr21:28516448-28517941~~chr21:28744483-28746572,
chr21:28516451-28517995~~chr21:28744497-28746545,
chr21:28516480-28517852~~chr21:28744326-28746557,
chr21:28516482-28517966~~chr21:28744423-28746593,
chr21:28516496-28517982~~chr21:28744207-28746688,
chr21:28516499-28517905~~chr21:28744483-28746431,
chr21:28516500-28517883~~chr21:28744479-28746534,
chr21:28516504-28517958~~chr21:28744313-28746546,
chr21:28516509-28517821~~chr21:28744324-28746498,
chr21:28516517-28517884~~chr21:28744494-28746441,
chr21:28516537-28517911~~chr21:28744386-28746621,
chr21:28516541-28517884~~chr21:28744431-28746530,
chr21:28518143-28519542~~chr21:28744431-28746621,
chr21:28521313-28523242~~chr21:28643788-28645721,
chr21:28525000-28550000~~chr21:28625000-28650000,
chr21:28525000-28550000~~chr21:28700000-28725000,
chr21:28525000-28550000~~chr21:28725000-28750000,
chr21:28525000-28550000~~chr21:28925000-28950000,
chr21:28525000-28550000~~chr21:30125000-30150000,