- Basic information
- CohesinDB ID: CDBP00415973
- Locus: chr21-28520608-28523119
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, ENCSR230ZWH, GSE72082, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE111537, GSE131606, GSE108869, GSE25021, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE165895, ENCSR000DZP, ENCSR000EAC, GSE143937, GSE93080, GSE138405, GSE76893, GSE101921, GSE135093, GSE206145-NatGen2015, ENCSR198ZYJ, GSE112028, GSE138105, ENCSR703TNG, GSE106870, GSE116344, GSE145327, GSE94872, ENCSR000EEG, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE85526, ENCSR000ECE, GSE206145, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR000BTQ, ENCSR167MTG, ENCSR000HPG, GSE155324, ENCSR054FKH, ENCSR000EDE, GSE68388, GSE126990, GSE50893, ENCSR000ECS, GSE131577
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Cell type: RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, CVI-hiPSC, Liver, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, HEKn, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, K-562, GM18486, DKO, HFFc6, H1-hESC, SNYDER, GM18505, Lymphoblast, GM12878, GM12891, GM2588, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, GM19099, HUES64, MCF-7, GM12892, Hela-Kyoto, HL-60, Hep-G2, Neurons-H1, HUVEC, HCAEC, GM19238, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 36% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.467
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 59%,
"7_Enh": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: GATA6, NCOA3, RUNX2, GATA4, TOP2A, DUX4, OCA2, SETDB1, STAT3
- Target gene symbol (double-evidenced CRMs): LINC00113,ADAMTS1,LTN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000225298,
ENSG00000198862,
- Related loop:
chr21:26825000-26850000~~chr21:28500000-28525000,
chr21:26825000-26850000~~chr21:28525000-28550000,
chr21:26850000-26875000~~chr21:28500000-28525000,
chr21:27550000-27575000~~chr21:28525000-28550000,
chr21:27700000-27725000~~chr21:28500000-28525000,
chr21:27750000-27775000~~chr21:28500000-28525000,
chr21:27750000-27775000~~chr21:28525000-28550000,
chr21:28050000-28075000~~chr21:28500000-28525000,
chr21:28050000-28075000~~chr21:28525000-28550000,
chr21:28050991-28052838~~chr21:28521403-28523335,
chr21:28051112-28052927~~chr21:28521324-28523315,
chr21:28075000-28100000~~chr21:28500000-28525000,
chr21:28100000-28125000~~chr21:28500000-28525000,
chr21:28225000-28250000~~chr21:28525000-28550000,
chr21:28325000-28350000~~chr21:28500000-28525000,
chr21:28325000-28350000~~chr21:28525000-28550000,
chr21:28334487-28338171~~chr21:28521160-28523346,
chr21:28338312-28339715~~chr21:28521324-28523315,
chr21:28350000-28375000~~chr21:28500000-28525000,
chr21:28500000-28525000~~chr21:28625000-28650000,
chr21:28500000-28525000~~chr21:28725000-28750000,
chr21:28500000-28525000~~chr21:28925000-28950000,
chr21:28516060-28518025~~chr21:28742005-28743432,
chr21:28516094-28518223~~chr21:28744204-28746655,
chr21:28516110-28518054~~chr21:28744361-28746655,
chr21:28516260-28517994~~chr21:28744214-28746632,
chr21:28516260-28517994~~chr21:28939420-28941341,
chr21:28516268-28518070~~chr21:28744329-28746608,
chr21:28516305-28518150~~chr21:28710604-28712266,
chr21:28516305-28518150~~chr21:28744396-28746610,
chr21:28516312-28518065~~chr21:28744462-28746595,
chr21:28516335-28518256~~chr21:28710721-28711970,
chr21:28516335-28518256~~chr21:28744250-28746679,
chr21:28516335-28518256~~chr21:28939349-28941136,
chr21:28516349-28517977~~chr21:28744171-28746673,
chr21:28516366-28517998~~chr21:28744241-28746558,
chr21:28516366-28518040~~chr21:28744325-28746663,
chr21:28516367-28517967~~chr21:28744528-28746609,
chr21:28516369-28518093~~chr21:28744334-28746652,
chr21:28516385-28518004~~chr21:28744246-28746649,
chr21:28516389-28518036~~chr21:28710702-28711996,
chr21:28516389-28518036~~chr21:28742004-28743407,
chr21:28516389-28518036~~chr21:28744431-28746621,
chr21:28516405-28518026~~chr21:28744207-28746569,
chr21:28516412-28518000~~chr21:28741981-28743659,
chr21:28516422-28518049~~chr21:28744175-28746644,
chr21:28516435-28517898~~chr21:28744281-28746569,
chr21:28516442-28517932~~chr21:28744495-28746431,
chr21:28516448-28517941~~chr21:28744483-28746572,
chr21:28516451-28517995~~chr21:28744497-28746545,
chr21:28516480-28517852~~chr21:28744326-28746557,
chr21:28516482-28517966~~chr21:28744423-28746593,
chr21:28516496-28517982~~chr21:28744207-28746688,
chr21:28516499-28517905~~chr21:28744483-28746431,
chr21:28516500-28517883~~chr21:28744479-28746534,
chr21:28516504-28517958~~chr21:28744313-28746546,
chr21:28516509-28517821~~chr21:28744324-28746498,
chr21:28516517-28517884~~chr21:28744494-28746441,
chr21:28516537-28517911~~chr21:28744386-28746621,
chr21:28516541-28517884~~chr21:28744431-28746530,
chr21:28518143-28519542~~chr21:28744431-28746621,
chr21:28521313-28523242~~chr21:28643788-28645721,
chr21:28525000-28550000~~chr21:28625000-28650000,
chr21:28525000-28550000~~chr21:28700000-28725000,
chr21:28525000-28550000~~chr21:28725000-28750000,
chr21:28525000-28550000~~chr21:28925000-28950000,
chr21:28525000-28550000~~chr21:30125000-30150000,