- Basic information
- CohesinDB ID: CDBP00415976
- Locus: chr21-28543998-28544380
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Data sourse: ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 87%,
"5_TxWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, PPARG, CEBPA, FOXA2, FOXA1, ZBTB33, MEF2C, ERG, YY1, RELA, ATF3, MYC, RAD21, RXRA, STAT3, MAX, NKX3-1, MED1, NR3C1, CEBPB, NR2F2, MYB, PIAS1, BAF155, SP1, BCL11A, HNF4A, AR, REST, GATA2, BRD4, JUND
- Target gene symbol (double-evidenced CRMs): ADAMTS1,LINC00113,LTN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000225298,
ENSG00000198862,
- Related loop:
chr21:26825000-26850000~~chr21:28525000-28550000,
chr21:27550000-27575000~~chr21:28525000-28550000,
chr21:27750000-27775000~~chr21:28525000-28550000,
chr21:28050000-28075000~~chr21:28525000-28550000,
chr21:28225000-28250000~~chr21:28525000-28550000,
chr21:28325000-28350000~~chr21:28525000-28550000,
chr21:28525000-28550000~~chr21:28625000-28650000,
chr21:28525000-28550000~~chr21:28700000-28725000,
chr21:28525000-28550000~~chr21:28725000-28750000,
chr21:28525000-28550000~~chr21:28925000-28950000,
chr21:28525000-28550000~~chr21:30125000-30150000,