Deatailed information for cohesin site CDBP00415977
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00415977
- Locus: chr21-28547810-28548217
- Data sourse: GSE206145-NatGen2015
- Cell type: Fibroblast
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 87%,
"5_TxWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: ERG2, RUNX2, ESR1, BRD4, FOXP1, MAX, CTCF
- Target gene symbol (double-evidenced CRMs): LINC00113,LTN1,ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000154734, ENSG00000225298, ENSG00000198862,
- Related loop: chr21:26825000-26850000~~chr21:28525000-28550000, chr21:26850000-26875000~~chr21:28550000-28575000, chr21:27550000-27575000~~chr21:28525000-28550000, chr21:27750000-27775000~~chr21:28525000-28550000, chr21:28050000-28075000~~chr21:28525000-28550000, chr21:28225000-28250000~~chr21:28525000-28550000, chr21:28325000-28350000~~chr21:28525000-28550000, chr21:28525000-28550000~~chr21:28625000-28650000, chr21:28525000-28550000~~chr21:28700000-28725000, chr21:28525000-28550000~~chr21:28725000-28750000, chr21:28525000-28550000~~chr21:28925000-28950000, chr21:28525000-28550000~~chr21:30125000-30150000, chr21:28550000-28575000~~chr21:28675000-28700000, chr21:28550000-28575000~~chr21:28725000-28750000,
Tools:
- Assay
