- Basic information
- CohesinDB ID: CDBP00415977
- Locus: chr21-28547810-28548217
-
Data sourse: GSE206145-NatGen2015
-
Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 87%,
"5_TxWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ERG2, RUNX2, ESR1, BRD4, FOXP1, MAX, CTCF
- Target gene symbol (double-evidenced CRMs): LINC00113,LTN1,ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000225298,
ENSG00000198862,
- Related loop:
chr21:26825000-26850000~~chr21:28525000-28550000,
chr21:26850000-26875000~~chr21:28550000-28575000,
chr21:27550000-27575000~~chr21:28525000-28550000,
chr21:27750000-27775000~~chr21:28525000-28550000,
chr21:28050000-28075000~~chr21:28525000-28550000,
chr21:28225000-28250000~~chr21:28525000-28550000,
chr21:28325000-28350000~~chr21:28525000-28550000,
chr21:28525000-28550000~~chr21:28625000-28650000,
chr21:28525000-28550000~~chr21:28700000-28725000,
chr21:28525000-28550000~~chr21:28725000-28750000,
chr21:28525000-28550000~~chr21:28925000-28950000,
chr21:28525000-28550000~~chr21:30125000-30150000,
chr21:28550000-28575000~~chr21:28675000-28700000,
chr21:28550000-28575000~~chr21:28725000-28750000,