- Basic information
- CohesinDB ID: CDBP00415982
- Locus: chr21-28572754-28572984
-
Data sourse: GSE206145-NatGen2015, GSE120943, GSE98367
-
Cell type: Fibroblast, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 94%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: JUN, NME2
- Target gene symbol (double-evidenced CRMs): ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154734,
- Related loop:
chr21:26825000-26850000~~chr21:28575000-28600000,
chr21:26850000-26875000~~chr21:28550000-28575000,
chr21:27750000-27775000~~chr21:28575000-28600000,
chr21:28175000-28200000~~chr21:28575000-28600000,
chr21:28325000-28350000~~chr21:28575000-28600000,
chr21:28550000-28575000~~chr21:28675000-28700000,
chr21:28550000-28575000~~chr21:28725000-28750000,
chr21:28575000-28600000~~chr21:28725000-28750000,
chr21:28575000-28600000~~chr21:28925000-28950000,