- Basic information
- CohesinDB ID: CDBP00415983
- Locus: chr21-28581117-28581680
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Data sourse: GSE67783, GSE86191, GSE116868, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE68388, GSE111537, GSE165895
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Cell type: RPE, Fibroblast, HCT-116, MB157, K-562, OCI-AML-3, HSPC, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 79%,
"7_Enh": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SKI, ZNF384, PAX3-FOXO1, PGR, CEBPB, CDK2, RUNX2, CEBPA, KMT2A, ESR1, BRD4, ZBTB48, NKX2-1, SETDB1, MYOD1, MEF2C, JUN, CDK8
- Target gene symbol (double-evidenced CRMs): LTN1,ADAMTS1,LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops