- Basic information
- CohesinDB ID: CDBP00415984
- Locus: chr21-28587521-28588238
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Data sourse: GSE206145-NatGen2015, GSE68388, GSE165895
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Cell type: Fibroblast, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, SS18, XBP1, DUX4, SMAD3, FOXA1, FOXF1, HOXB13, ERG, HOXC5, RELA, TFAP4, ZNF384, ZNF90, RUNX2, NFIC, SMARCA4, CHD7, TCF4, DAXX, PBX4, GATA3, ZNF48, NKX3-1, FOS, CDK8, MED1, CDX2, KLF4, CEBPB, NR3C1, TEAD1, CREB1, PIAS1, KLF6, ESR1, HNF1B, SETDB1, ELF3, CTCF, TCF12, BAF155, AR, PAX3-FOXO1, GATA2, NCOR1, BRD4, JUND, NCOR2, FOSL2
- Target gene symbol (double-evidenced CRMs): ADAMTS1,LTN1,LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops