- Basic information
- CohesinDB ID: CDBP00415985
- Locus: chr21-28589885-28590379
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Data sourse: ENCSR879KXD, GSE73207
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Cell type: K-562, TF-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 82%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CEBPA, LDB1, STAT1, FOXA1, ERG3, ERG2, ERG, RELA, LYL1, ARID1B, TAL1, CBFA2T3, GATA1, CDK8, NFE2, TRIM28, TCF7L2, LMO2, KLF16, TCF12, SPI1, BCL11A, ZBTB40, GATA2, SOX6, BRD4, TEAD4
- Target gene symbol (double-evidenced CRMs): LTN1,LINC00113,ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops