Deatailed information for cohesin site CDBP00415997
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00415997
- Locus: chr21-28628505-28628838
- Data sourse: GSE67783
- Cell type: HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 86%,
"5_TxWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene: ENSG00000154734,
- Related loop: chr21:25350000-25375000~~chr21:28625000-28650000, chr21:26825000-26850000~~chr21:28625000-28650000, chr21:28225000-28250000~~chr21:28625000-28650000, chr21:28325000-28350000~~chr21:28625000-28650000, chr21:28375000-28400000~~chr21:28625000-28650000, chr21:28425000-28450000~~chr21:28625000-28650000, chr21:28500000-28525000~~chr21:28625000-28650000, chr21:28525000-28550000~~chr21:28625000-28650000, chr21:28625000-28650000~~chr21:28725000-28750000,
Tools:
- Assay
