- Basic information
- CohesinDB ID: CDBP00416097
- Locus: chr21-29029109-29029871
-
Data sourse: ENCSR230ZWH, GSE67783, GSE86191, GSE206145-NatGen2015, ENCSR153HNT
-
Cell type: Fibroblast, HCT-116, K-562, Liver, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
72% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"4_Tx": 50%,
"5_TxWk": 46%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: MED1, RELA, HDAC2, CEBPB, CEBPA, MYC, TOP2A, RAD21, DUX4, RXRA, JUND, HLF, BATF, MAX, RBM22, SP1, HNF4G, ERG, HNF4A
- Target gene symbol (double-evidenced CRMs): USP16
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000156256,
- Related loop:
chr21:17775000-17800000~~chr21:29000000-29025000,
chr21:25325000-25350000~~chr21:29000000-29025000,
chr21:25725000-25750000~~chr21:29000000-29025000,
chr21:28991455-28993844~~chr21:29023842-29026326,
chr21:28991517-28993800~~chr21:29024190-29026094,
chr21:28991528-28993711~~chr21:29024204-29026148,
chr21:28991579-28993764~~chr21:29023633-29025850,
chr21:28991614-28993817~~chr21:29023881-29026318,
chr21:28991807-28993775~~chr21:29023855-29025783,
chr21:29025000-29050000~~chr21:31675000-31700000,
chr21:29025000-29050000~~chr21:32325000-32350000,
chr21:29025000-29050000~~chr21:32750000-32775000,
chr21:29025000-29050000~~chr21:33525000-33550000,