Browse_each

Basic information

CohesinDB ID: CDBG00009956

Gene Symbol: USP16

Ensembl ID: ENSG00000156256

Gene locus: chr21:29024628-29054488 Strand: +

Gene type: protein_coding

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): True

All evidenced type: Interaction,DEGs,

Regulatory cohesin (double-evidenced): chr21-28951723-28951953, chr21-28959314-28959751, chr21-28961868-28962960, chr21-28968738-28969112, chr21-28991642-28993980, chr21-29001800-29004153, chr21-29018321-29020227, chr21-29021625-29022143, chr21-29023611-29026769, chr21-29029109-29029871, chr21-29033430-29033597, chr21-29035392-29035855, chr21-29048000-29048139, chr21-29051564-29051818, chr21-29053116-29053515, chr21-29054263-29054943, chr21-29057293-29057849, chr21-29058619-29059007, chr21-29296491-29303668, chr21-29304154-29305335, chr21-29305747-29309169, chr21-29313792-29314472, chr21-29315462-29315610, chr21-29315990-29317552, chr21-29318199-29318712, chr21-29319627-29319847, chr21-29320109-29320295, chr21-29320703-29320863, chr21-29321259-29321494, chr21-29321914-29322368, chr21-29322647-29323646, chr21-29323911-29324647, chr21-29324965-29325251,

Co-expression with cohesin genes Rho = 0.7593 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.216
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.880
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: HEK293T,ARPE-19,GM12878,CyT49-endoderm,Hep-G2,IMR-90,K-562,H1-hESC,HT-1376,HFF-hTERT,HAP1,HFFc6,Jurkat,PAEC,H9-hESC,BMEC,CyT49-hESC

Cohesin-loop type: HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, ENCSR194SRI, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR852KQC, ENCSR361AYD, ENCSR146FPM, ENCSR410MDC, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, ENCSR668RDP, 4DNFICSTCJQZ, ENCSR981FNA, ENCSR587DSF, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, GSE52457, 4DNFI3A3VYWU, Direct, 4DNFI6XD6JAQ, 4DNFIYDBBSE3, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFIK61ILGM, GSE44267, 4DNFIPAF4PYT, ENCSR110JOO, 4DNFIDKJFK2S, ENCSR933UZH, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, GSE105028, ENCSR507AHE, 4DNFII84FBKM

Cohesin-loop subunit: Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: True

Involved cell types for DEG evidence: SLK,Kelly

Cohesin-DEGs, number of studies: 3

Cohesin-DEGs, study: GSE115253,GSE138937

Cohesin-DEGs, subunit: CTCF,Rad21,BORIS

eachgene

Deatailed information for gene ENSG00000156256