- Basic information
- CohesinDB ID: CDBP00416098
- Locus: chr21-29033430-29033597
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Data sourse: GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
72% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 52%,
"5_TxWk": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, NFATC3, PGR, POU2F2, FOXA2, SOX2, NFATC1, ZNF600, MTA2, FOXA1, ZBTB33, MEF2C, RBFOX2, CDK9, PBX2, HOXB13, SMARCC1, ERG, OGG1, MYC, NFIC, RUNX3, ZFP36, TCF4, ARNT, GATA3, SMARCE1, FOXM1, SPIB, SUPT5H, GATA1, CDK8, IKZF1, MED1, CEBPB, JMJD1C, NR2F2, ELF1, PIAS1, ESR1, GRHL2, CTCF, JUN, ELF3, BCL11A, BAF155, SPI1, TBX21, AR, DPF2, GATA2, REST, TRIM24, IRF4, ATF7, ASH2L, IKZF2, BRD4, FOXP1, ZZZ3, MLLT1
- Target gene symbol (double-evidenced CRMs): USP16
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 0
- Related genes and loops