Browse_each

Basic information

CohesinDB ID: CDBP00416100

Locus: chr21-29048000-29048139

Data sourse: GSE120943, GSE98367

Cell type: Monocytes, Macrophage

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 72% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "4_Tx": 66%, "5_TxWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, CEBPB, HOXB13, ETS1, RUNX2, ZNF264, CDK6, SMAD5, ZSCAN16, PKNOX1, BRD4, DUX4, FOXP1, PRDM9, FOXA1, ZSCAN4, CTCF, RBM22, SUPT5H, SPI1

Target gene symbol (double-evidenced CRMs): USP16

Function elements

Human SNPs: .

Number of somatic mutations (coding): 3

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000156256,

eachgene

Deatailed information for cohesin site CDBP00416100