- Basic information
- CohesinDB ID: CDBP00416131
- Locus: chr21-29129649-29131620
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Data sourse: ENCSR000EFJ, ENCSR000BTU, GSE67783, GSE86191, GSE98367, ENCSR000HPG, ENCSR000BLY, GSE206145, GSE85526, GSE206145-NatGen2015, ENCSR153HNT, GSE68388, GSE138105, GSE83726, GSE116344, GSE50893, GSE165895
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Cell type: RPE, GM2630, Macrophage, Fibroblast, HCT-116, RH4, HEKn, SLK, Ishikawa, GM19238, IMR-90, SK-N-SH, K-562, HSPC, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 11% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.822
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
72% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 46%,
"7_Enh": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, E2F7, HNF1A, XBP1, FOXA1, HNRNPK, HDGF, ZNF90, ATF3, NFIC, RUNX3, CHD7, CBFB, PAX5, TP63, ZNF320, MYOG, TEAD1, TRIM28, ETV1, SNAI2, NFE2L2, ESR1, OCA2, TP73, MED26, JUN, TCF12, CTCF, BAF155, EP300, LMO1, DPF2, TEAD4, EED, POU2F2, CHD8, POU5F1, MYCN, TOP2A, KDM4C, MTA2, DUX4, ZBTB48, NBN, ERG, HOXC5, PAX6, MYC, SMARCA4, ARID1B, RAD21, FOXP2, GRHL3, RXRA, PROX1, GABPA, STAT3, IKZF1, NFE2, RCOR1, HNRNPH1, VDR, ARNTL, NR3C1, CEBPB, EZH2, GRHL2, EBF3, ZHX2, HDAC2, GATA2, ZNF644, GATAD2B, FLI1, MXI1, SMARCA5, RELB, MRTFB, MYF5, RUNX1, MAFG, SMC1A, EZH2phosphoT487, CRY1, SIN3A, ZFX, POU4F2, SMAD3, TET2, CBX8, SMARCC1, PRDM10, MEF2A, RUNX2, GATA4, ARNT, PBX4, DAXX, PBX3, CBFA2T3, FOS, CHD1, CDK8, MED1, MYB, SCRT2, PIAS1, C11orf30, NCOA1, SETDB1, MAFK, BCL11A, SP1, USF1, REST, ARID1A, ATF7, ASH2L, HNRNPLL, TCF3, SMC3, MLLT1, STAG1, NFATC3, CBFA2T2, PPARG, FOXA2, TBL1X, EBF1, SS18, ZSCAN16, GTF2B, WT1, ZBTB33, YY1, RELA, TARDBP, JUNB, SP140, ZFP36, HIF1A, TCF4, GATA3, BATF, TAL1, MAX, GATA1, ZNF143, TLE3, NCOA3, NR2F2, KDM5B, TP53, MYOD1, BRD2, TBX21, BHLHE40, AR, PAX3-FOXO1, TAF1, YAP1, HSF1, RNF2, IKZF2, BRD4, JUND, SCRT1, MAZ, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): MAP3K7CL
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 58
- Number of somatic mutations (non-coding): 7
- Related genes and loops