- Basic information
- CohesinDB ID: CDBP00416136
- Locus: chr21-29148256-29148957
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Data sourse: ENCSR000DZP, GSE111537, ENCSR000BLY, ShirahigeLab, GSE101921, ShirahigeLab-NatGen2015, GSE116344, GSE50893, GSE165895
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Cell type: RPE, HMEC, Fibroblast, RH4, GM12878, GM19238, SK-N-SH, GM19239, OCI-AML-3, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
72% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 43%,
"7_Enh": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, PGR, SOX2, XBP1, FOXA1, BMI1, NFIC, RUNX3, CBFB, PAX5, MAF, JMJD1C, ELF1, TRIM28, ZNF217, ESR1, TP73, CTCF, TCF12, LMO1, DPF2, TRIM24, SMC1, RBPJ, EED, POU2F2, CHD8, MYCN, TOP2A, CDK7, RUNX1T1, MTA2, NBN, ZNF300, ERG, MYC, SMARCA4, GRHL3, BATF3, GABPA, IKZF1, ARNTL, NR3C1, CEBPB, STAT5B, KMT2A, EZH2, ZHX2, SPI1, RELB, RUNX1, BCL6, CEBPA, ZFX, SMARCC1, PRDM10, CREBBP, RUNX2, ARNT, HMGB2, SUPT5H, CDK8, MED1, MYB, STAT5A, BCL11A, ATF7, TCF3, MLLT1, NFATC3, EBF1, MEIS1, SS18, CDK9, RELA, TARDBP, TCF4, HIF1A, SKIL, GATA3, BATF, TAL1, MAX, BCL11B, NCOA3, NEUROG2, NR2F1, MED, ZNF334, NFKB1, MYOD1, TBX21, BHLHE40, AR, IKZF2, BRD4, ZNF24
- Target gene symbol (double-evidenced CRMs): MAP3K7CL
- Function elements
- Human SNPs: Height
- Number of somatic mutations (coding): 30
- Number of somatic mutations (non-coding): 0
- Related genes and loops