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Basic information

CohesinDB ID: CDBP00416287

Locus: chr21-29684505-29684809

Data sourse: GSE206145-NatGen2015, GSE111913, GSE67783

Cell type: RT-112, Fibroblast, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 37% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 96%, "14_ReprPCWk": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: BCL6, FOXA2, DUX4, STAT1, ZBTB33, BAHD1, CDK9, GATA4, CHAMP1, RAD21, SP140, GRHL3, GATA3, ZEB2, GATA1, CDK8, IKZF1, DACH1, VDR, GMEB1, ARNTL, MLL, TRPS1, ELF4, SPI1, GATA6, ZBTB40, GATA2, GATAD2B, MYNN, BRD4, ZNF316

Target gene symbol (double-evidenced CRMs): MAP3K7CL,GRIK1,BACH1,TIAM1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 21

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156265, ENSG00000156273, ENSG00000171189, ENSG00000156299,

eachgene

Deatailed information for cohesin site CDBP00416287