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Basic information

CohesinDB ID: CDBP00416288

Locus: chr21-29688617-29688835

Data sourse: ENCSR000BLD, GSE143937, ENCSR230ZWH, ENCSR000BKV, ENCSR000BLY, ENCSR879KXD, GSE105028, ENCSR000EHX, ENCSR917QNE

Cell type: H1-hESC, SK-N-SH, K-562, Liver, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.944

Subunit: Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 37% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 94%, "14_ReprPCWk": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RELA, ZNF592, REST, ZBTB40, MYC, SIX5, RAD21, PRDM1, PBX2, TP53, ZNF24, DUX4, STAT1, ATF2, ZBTB33, SMARCE1, MAX, CTCF, ZNF18, ERG

Target gene symbol (double-evidenced CRMs): BACH1,TIAM1,MAP3K7CL,GRIK1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 14

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156265, ENSG00000156273, ENSG00000171189, ENSG00000156299,

eachgene

Deatailed information for cohesin site CDBP00416288