- Basic information
- CohesinDB ID: CDBP00416367
- Locus: chr21-30340219-30341812
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR917QNE, GSE115602, GSE93080, GSE101921, ENCSR806UKK, GSE51234, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, ENCSR000EEG, GSE115248, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, ENCSR748MVX, ENCSR000ECS, GSE38411, ENCSR000BLD, GSE131577, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE106870, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE131956, GSE110061, ENCSR000HPG, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, CVI-hiPSC, Liver, GP5d, TC-32, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HCAEC, GM19238, HeLa, CNCC-WT33iPSC, TC-71, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 49% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.289
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 94%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, NANOG, SMC1A, PPARG, FOXA2, POU5F1, ZNF660, NKX2-2, PGR, CBX3, STAG2, SMAD3, DUX4, FOXA1, SRF, ZNF654, CDK9, TRIM22, HOXB13, ERG, HOXC5, RELA, ZBTB2, ZNF35, JUNB, MYC, RAD21, PBX4, DAXX, HIF1A, ARNT, OTX2, PROX1, NKX2-1, GABPA, BATF, MAX, NKX3-1, FOS, ZNF143, TLE3, CEBPB, TEAD1, CREB1, PIAS1, SMAD1, STAG1, KDM5B, ESR1, TP53, TCF7L2, SETDB1, CTCF, JUN, USF1, BAF155, AR, GATA2, REST, IRF4, EGLN2, BRD4, FOXP1, SMC1, SMC3, PDX1
- Target gene symbol (double-evidenced CRMs): KRTAP19-1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 13
- Related genes and loops
- Related gene:
ENSG00000184351,
- Related loop:
chr21:30325000-30350000~~chr21:30425000-30450000,
chr21:30325000-30350000~~chr21:30450000-30475000,
chr21:30325000-30350000~~chr21:30600000-30625000,
chr21:30325000-30350000~~chr21:30700000-30725000,
chr21:30325000-30350000~~chr21:30725000-30750000,
chr21:30325000-30350000~~chr21:30800000-30825000,
chr21:30325000-30350000~~chr21:30950000-30975000,
chr21:30325000-30350000~~chr21:31075000-31100000,
chr21:30325000-30350000~~chr21:31600000-31625000,
chr21:30339916-30342014~~chr21:30408143-30409974,
chr21:30339916-30342014~~chr21:31085519-31087782,
chr21:30339931-30341880~~chr21:30408176-30409736,
chr21:30339931-30341880~~chr21:31085533-31087826,
chr21:30340011-30342123~~chr21:31085530-31087710,
chr21:30340024-30341985~~chr21:30408114-30409983,
chr21:30340030-30342152~~chr21:30408268-30409710,
chr21:30340030-30342152~~chr21:30433551-30435071,
chr21:30340048-30341945~~chr21:30433610-30434852,
chr21:30340055-30342502~~chr21:31085562-31087741,
chr21:30340192-30341934~~chr21:31085546-31087778,
chr21:30340204-30342131~~chr21:31085559-31087705,
chr21:30340273-30341985~~chr21:30463198-30464953,
chr21:30340273-30341985~~chr21:31085537-31087555,
chr21:30340305-30341906~~chr21:31085906-31087666,
chr21:30340318-30342001~~chr21:31085511-31087571,
chr21:30340324-30342049~~chr21:31085715-31087665,
chr21:30340334-30342037~~chr21:31085637-31087698,
chr21:30340351-30342574~~chr21:31085574-31087685,
chr21:30340360-30341986~~chr21:30433572-30435022,
chr21:30340360-30341986~~chr21:31085489-31087693,
chr21:30340372-30342163~~chr21:31085544-31087394,
chr21:30340373-30341904~~chr21:30408191-30409743,
chr21:30340375-30341994~~chr21:30838731-30840270,
chr21:30340384-30341923~~chr21:31085751-31087710,
chr21:30340477-30341815~~chr21:31085892-31087434,
chr21:30340480-30341926~~chr21:31085276-31087698,
chr21:30340481-30341892~~chr21:31085689-31087405,
chr21:30340611-30341818~~chr21:31085509-31087552,
chr21:30344537-30345828~~chr21:30463198-30464953,
chr21:30344537-30345918~~chr21:30433207-30435071,