- Basic information
- CohesinDB ID: CDBP00416368
- Locus: chr21-30345002-30345474
-
Data sourse: ENCSR000BLD, ENCSR000BLY, GSE105028, ENCSR000ECE, GSE145327, GSE97394
-
Cell type: H1-hESC, HUES64, SK-N-SH, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 85%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CTCF, RAD21
- Target gene symbol (double-evidenced CRMs): KRTAP19-1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops
- Related gene:
ENSG00000184351,
- Related loop:
chr21:30325000-30350000~~chr21:30425000-30450000,
chr21:30325000-30350000~~chr21:30450000-30475000,
chr21:30325000-30350000~~chr21:30600000-30625000,
chr21:30325000-30350000~~chr21:30700000-30725000,
chr21:30325000-30350000~~chr21:30725000-30750000,
chr21:30325000-30350000~~chr21:30800000-30825000,
chr21:30325000-30350000~~chr21:30950000-30975000,
chr21:30325000-30350000~~chr21:31075000-31100000,
chr21:30325000-30350000~~chr21:31600000-31625000,
chr21:30339916-30342014~~chr21:30408143-30409974,
chr21:30339916-30342014~~chr21:31085519-31087782,
chr21:30339931-30341880~~chr21:30408176-30409736,
chr21:30339931-30341880~~chr21:31085533-31087826,
chr21:30340011-30342123~~chr21:31085530-31087710,
chr21:30340024-30341985~~chr21:30408114-30409983,
chr21:30340030-30342152~~chr21:30408268-30409710,
chr21:30340030-30342152~~chr21:30433551-30435071,
chr21:30340048-30341945~~chr21:30433610-30434852,
chr21:30340055-30342502~~chr21:31085562-31087741,
chr21:30340192-30341934~~chr21:31085546-31087778,
chr21:30340204-30342131~~chr21:31085559-31087705,
chr21:30340273-30341985~~chr21:30463198-30464953,
chr21:30340273-30341985~~chr21:31085537-31087555,
chr21:30340305-30341906~~chr21:31085906-31087666,
chr21:30340318-30342001~~chr21:31085511-31087571,
chr21:30340324-30342049~~chr21:31085715-31087665,
chr21:30340334-30342037~~chr21:31085637-31087698,
chr21:30340351-30342574~~chr21:31085574-31087685,
chr21:30340360-30341986~~chr21:30433572-30435022,
chr21:30340360-30341986~~chr21:31085489-31087693,
chr21:30340372-30342163~~chr21:31085544-31087394,
chr21:30340373-30341904~~chr21:30408191-30409743,
chr21:30340375-30341994~~chr21:30838731-30840270,
chr21:30340384-30341923~~chr21:31085751-31087710,
chr21:30340477-30341815~~chr21:31085892-31087434,
chr21:30340480-30341926~~chr21:31085276-31087698,
chr21:30340481-30341892~~chr21:31085689-31087405,
chr21:30340611-30341818~~chr21:31085509-31087552,
chr21:30344537-30345828~~chr21:30463198-30464953,
chr21:30344537-30345918~~chr21:30433207-30435071,
chr21:30350000-30375000~~chr21:30475000-30500000,
chr21:30350000-30375000~~chr21:30675000-30700000,
chr21:30350000-30375000~~chr21:31375000-31400000,