- Basic information
- CohesinDB ID: CDBP00416390
- Locus: chr21-30484012-30484413
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: False
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 96%,
"9_Het": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, FOXA2, TBL1X, TOP2A, CDK7, SOX2, ZNF600, XBP1, NME2, ZBTB48, DUX4, ZSCAN16, FOXA1, ZNF205, ZNF823, BAHD1, ERG, RELA, ZNF384, JUNB, SMARCA4, GATA4, RAD21, CHD7, GRHL3, HIF1A, NKX2-1, FOXK2, TP63, SOX10, FOS, GATA1, MITF, RCOR1, MAFB, MED1, VDR, ARNTL, JMJD1C, EZH2, KDM5B, KLF8, PKNOX1, GRHL2, TBX5, SETDB1, BRD2, JUN, NUP98-HOXA9, SPI1, CTCF, ZNF257, ZNF366, SIX2, HOXA9, BRD4, NCOR2, BRCA1
- Target gene symbol (double-evidenced CRMs): KRTAP19-1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops