- Basic information
- CohesinDB ID: CDBP00416434
- Locus: chr21-30825036-30825632
-
Data sourse: ShirahigeLab-NatGen2015, GSE67783, GSE86191
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Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
21% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GRHL2, HIF1A
- Target gene symbol (double-evidenced CRMs): KRTAP19-1,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000184351,
ENSG00000156299,
- Related loop:
chr21:30325000-30350000~~chr21:30800000-30825000,
chr21:30450000-30475000~~chr21:30825000-30850000,
chr21:30500000-30525000~~chr21:30800000-30825000,
chr21:30675000-30700000~~chr21:30800000-30825000,
chr21:30800000-30825000~~chr21:31025000-31050000,
chr21:30825000-30850000~~chr21:30925000-30950000,
chr21:30825000-30850000~~chr21:31025000-31050000,
chr21:30825000-30850000~~chr21:31050000-31075000,
chr21:30825000-30850000~~chr21:31075000-31100000,
chr21:30825000-30850000~~chr21:31250000-31275000,
chr21:30825000-30850000~~chr21:31600000-31625000,
chr21:30830459-30832429~~chr21:31085305-31087770,
chr21:30830463-30832644~~chr21:31085276-31087698,
chr21:30830556-30832338~~chr21:31085303-31087674,
chr21:30830558-30832217~~chr21:31085880-31087834,
chr21:30830586-30832133~~chr21:31085846-31087579,
chr21:30830591-30832139~~chr21:31085855-31087840,
chr21:30830596-30832211~~chr21:31085853-31087731,
chr21:30830621-30832317~~chr21:31085511-31087571,
chr21:30830627-30832163~~chr21:31085534-31087724,