- Basic information
- CohesinDB ID: CDBP00416435
- Locus: chr21-30826842-30827333
-
Data sourse: ENCSR000BLD, ENCSR167MTG, ENCSR000EEG, GSE72082, GSE138405, GSE25021, ENCSR000BLY, ENCSR404BPV, ENCSR000BLS, GSE105028, ENCSR000ECE, ENCSR198ZYJ, GSE131606, GSE50893
-
Cell type: MCF-7, H1-hESC, Hela-Kyoto, Hep-G2, Neurons-H1, GM2588, DKO, SK-N-SH, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SA2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
21% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 86%,
"9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RELA, AR, MYC, FOXA2, RAD21, EZH2, XBP1, HIF1A, BRD4, OCA2, FOXA1, ZNF205, GABPA, BAHD1, SMC3, CTCF, STAG1
- Target gene symbol (double-evidenced CRMs): TIAM1,KRTAP19-1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000184351,
ENSG00000156299,
- Related loop:
chr21:30325000-30350000~~chr21:30800000-30825000,
chr21:30450000-30475000~~chr21:30825000-30850000,
chr21:30500000-30525000~~chr21:30800000-30825000,
chr21:30675000-30700000~~chr21:30800000-30825000,
chr21:30800000-30825000~~chr21:31025000-31050000,
chr21:30825000-30850000~~chr21:30925000-30950000,
chr21:30825000-30850000~~chr21:31025000-31050000,
chr21:30825000-30850000~~chr21:31050000-31075000,
chr21:30825000-30850000~~chr21:31075000-31100000,
chr21:30825000-30850000~~chr21:31250000-31275000,
chr21:30825000-30850000~~chr21:31600000-31625000,
chr21:30830459-30832429~~chr21:31085305-31087770,
chr21:30830463-30832644~~chr21:31085276-31087698,
chr21:30830556-30832338~~chr21:31085303-31087674,
chr21:30830558-30832217~~chr21:31085880-31087834,
chr21:30830586-30832133~~chr21:31085846-31087579,
chr21:30830591-30832139~~chr21:31085855-31087840,
chr21:30830596-30832211~~chr21:31085853-31087731,
chr21:30830621-30832317~~chr21:31085511-31087571,
chr21:30830627-30832163~~chr21:31085534-31087724,
chr21:30830642-30832041~~chr21:31085610-31087382,
chr21:30830642-30832041~~chr21:31603800-31605717,
chr21:30830642-30832312~~chr21:31085539-31087715,
chr21:30830656-30832111~~chr21:31085865-31087801,
chr21:30830656-30832237~~chr21:31085540-31087780,
chr21:30830659-30832102~~chr21:31085883-31087739,
chr21:30830671-30832343~~chr21:31085489-31087693,
chr21:30830671-30832343~~chr21:31603478-31605998,
chr21:30830675-30832099~~chr21:31085895-31087538,
chr21:30830675-30832195~~chr21:31064348-31065654,
chr21:30830675-30832195~~chr21:31085886-31087793,
chr21:30830678-30832179~~chr21:31085537-31087555,
chr21:30830681-30832084~~chr21:31085892-31087434,
chr21:30830698-30832369~~chr21:31085533-31087771,
chr21:30830704-30832054~~chr21:31085911-31087273,
chr21:30830706-30832273~~chr21:31085533-31087826,
chr21:30830708-30832383~~chr21:31085519-31087782,
chr21:30830758-30832312~~chr21:31085637-31087698,
chr21:30830762-30832234~~chr21:31085581-31087374,