- Basic information
- CohesinDB ID: CDBP00416436
- Locus: chr21-30830980-30832249
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, ENCSR230ZWH, ENCSR000FAD, GSE72082, ENCSR000BSB, ENCSR000EGW, ENCSR000BLY, ENCSR404BPV, ENCSR150EFU, GSE105028, GSE121355, GSE73207, GSE103477, GSE111537, GSE131606, ENCSR330ELC, ENCSR000EDW, GSE108869, ENCSR000BUC, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE25021, ENCSR000DZP, ENCSR000EAC, GSE143937, ENCSR000BKV, GSE122299, GSE138405, GSE93080, GSE76893, GSE51234, GSE135093, GSE206145-NatGen2015, GSE120943, GSE138105, GSE130135, GSE116344, GSE106870, GSE145327, ENCSR000EEG, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE85526, ENCSR000ECE, ENCSR247LSH, ENCSR000BMY, ENCSR000EHX, ENCSR620NWG, ENCSR767DFK, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR984DZW, GSE97394, ENCSR217ELF, GSE38395, GSE105004, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, GSE55407, ENCSR944ZCT, GSE110061, GSE129526, ENCSR000HPG, GSE155324, GSE38411, ENCSR335RKQ, ENCSR054FKH, ENCSR000EDE, GSE68388, GSE206145, GSE126990, GSE50893, ENCSR000ECS, GSE131577
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, CVI-hiPSC, Liver, GP5d, HuCC-T1, B-cell, H9-hESC, GM2630, RPE, Fibroblast, HEKn, Ishikawa, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Lymphoblast, TF-1, GM12878, GM12891, GM2588, SK-N-SH, GM19239, GM19193, THP-1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, Neurons-H1, A-549, Ramos, GM19238, HeLa, CNCC-WT33iPSC, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 38% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.333
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
21% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 68%,
"9_Het": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CBX5, CBX1, SMC1A, ZNF496, POU5F1, CBX3, MYCN, ZNF660, TEAD4, ZNF317, GTF2B, DUX4, SMAD3, FOXA1, ZNF205, SRF, ZNF654, MEF2C, CDK9, HOXB13, ZBTB2, MYC, ZNF280A, GATA4, RAD21, RUNX3, GRHL3, GATA3, SMC3, GABPA, MAX, GATA1, ZNF143, RCOR1, NR2F6, MED1, TRIM28, PIAS1, SMAD1, KDM5B, ESR1, SETDB1, PHOX2B, CTCF, KLF16, SPI1, AR, REST, GATA2, IRF4, HSF1, BRD4, JUND, SMC1, MRTFB, ZIM3, STAG1
- Target gene symbol (double-evidenced CRMs): KRTAP19-1,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000184351,
ENSG00000156299,
- Related loop:
chr21:30450000-30475000~~chr21:30825000-30850000,
chr21:30825000-30850000~~chr21:30925000-30950000,
chr21:30825000-30850000~~chr21:31025000-31050000,
chr21:30825000-30850000~~chr21:31050000-31075000,
chr21:30825000-30850000~~chr21:31075000-31100000,
chr21:30825000-30850000~~chr21:31250000-31275000,
chr21:30825000-30850000~~chr21:31600000-31625000,
chr21:30830459-30832429~~chr21:31085305-31087770,
chr21:30830463-30832644~~chr21:31085276-31087698,
chr21:30830556-30832338~~chr21:31085303-31087674,
chr21:30830558-30832217~~chr21:31085880-31087834,
chr21:30830586-30832133~~chr21:31085846-31087579,
chr21:30830591-30832139~~chr21:31085855-31087840,
chr21:30830596-30832211~~chr21:31085853-31087731,
chr21:30830621-30832317~~chr21:31085511-31087571,
chr21:30830627-30832163~~chr21:31085534-31087724,
chr21:30830642-30832041~~chr21:31085610-31087382,
chr21:30830642-30832041~~chr21:31603800-31605717,
chr21:30830642-30832312~~chr21:31085539-31087715,
chr21:30830656-30832111~~chr21:31085865-31087801,
chr21:30830656-30832237~~chr21:31085540-31087780,
chr21:30830659-30832102~~chr21:31085883-31087739,
chr21:30830671-30832343~~chr21:31085489-31087693,
chr21:30830671-30832343~~chr21:31603478-31605998,
chr21:30830675-30832099~~chr21:31085895-31087538,
chr21:30830675-30832195~~chr21:31064348-31065654,
chr21:30830675-30832195~~chr21:31085886-31087793,
chr21:30830678-30832179~~chr21:31085537-31087555,
chr21:30830681-30832084~~chr21:31085892-31087434,
chr21:30830698-30832369~~chr21:31085533-31087771,
chr21:30830704-30832054~~chr21:31085911-31087273,
chr21:30830706-30832273~~chr21:31085533-31087826,
chr21:30830708-30832383~~chr21:31085519-31087782,
chr21:30830758-30832312~~chr21:31085637-31087698,
chr21:30830762-30832234~~chr21:31085581-31087374,