Deatailed information for cohesin site CDBP00416438
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00416438
- Locus: chr21-30843090-30843297
- Data sourse: ENCSR000BLD, ENCSR000ECE
- Cell type: H1-hESC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 21% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 94%,
"9_Het": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: ZFP64, SIN3A, RAD21, TP63, SRF, GABPA, MAX, CTCF, ZNF24
- Target gene symbol (double-evidenced CRMs): TIAM1,KRTAP19-1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene: ENSG00000184351, ENSG00000156299,
- Related loop: chr21:30340375-30341994~~chr21:30838731-30840270, chr21:30450000-30475000~~chr21:30825000-30850000, chr21:30505120-30506860~~chr21:30838591-30840304, chr21:30825000-30850000~~chr21:30925000-30950000, chr21:30825000-30850000~~chr21:31025000-31050000, chr21:30825000-30850000~~chr21:31050000-31075000, chr21:30825000-30850000~~chr21:31075000-31100000, chr21:30825000-30850000~~chr21:31250000-31275000, chr21:30825000-30850000~~chr21:31600000-31625000, chr21:30838509-30840405~~chr21:31085305-31087770, chr21:30838591-30840304~~chr21:31085537-31087555, chr21:30838850-30840221~~chr21:31085886-31087793, chr21:30838921-30840264~~chr21:31603607-31605876,
Tools:
- Assay
