- Basic information
- CohesinDB ID: CDBP00416440
- Locus: chr21-30847638-30847960
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Data sourse: ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
21% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, PAX3-FOXO1, SMARCA4, POU4F2, XBP1, HIF1A, OTX2, FOXA1, ZNF334, SETDB1, CTCF, EP300
- Target gene symbol (double-evidenced CRMs): KRTAP19-1,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000184351,
ENSG00000156299,
- Related loop:
chr21:30450000-30475000~~chr21:30825000-30850000,
chr21:30825000-30850000~~chr21:30925000-30950000,
chr21:30825000-30850000~~chr21:31025000-31050000,
chr21:30825000-30850000~~chr21:31050000-31075000,
chr21:30825000-30850000~~chr21:31075000-31100000,
chr21:30825000-30850000~~chr21:31250000-31275000,
chr21:30825000-30850000~~chr21:31600000-31625000,
chr21:30850000-30875000~~chr21:31075000-31100000,