- Basic information
- CohesinDB ID: CDBP00413612
- Locus: chr21-15876479-15876649
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Data sourse: ENCSR000BLD, ENCSR000ECE, GSE25021
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Cell type: MCF-7, H1-hESC, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 51%,
"5_TxWk": 46%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, ZNF283, GATA1, MYC, NCOR1, ARNT, BRD4, FOXA1, FOXP1, TAL1, SUPT5H, ERG
- Target gene symbol (double-evidenced CRMs): USP25,HSPA13,BTG3,CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000155313,
ENSG00000154639,
ENSG00000154640,
- Related loop:
chr21:14375000-14400000~~chr21:15875000-15900000,
chr21:15750000-15775000~~chr21:15850000-15875000,
chr21:15875000-15900000~~chr21:16000000-16025000,
chr21:15875000-15900000~~chr21:16075000-16100000,
chr21:15875000-15900000~~chr21:16275000-16300000,
chr21:15875000-15900000~~chr21:16325000-16350000,
chr21:15875000-15900000~~chr21:16600000-16625000,
chr21:15875000-15900000~~chr21:17250000-17275000,
chr21:15875000-15900000~~chr21:17575000-17600000,