- Basic information
- CohesinDB ID: CDBP00413931
- Locus: chr21-17404236-17404703
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Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"14_ReprPCWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, CHD8, EGLN2, ZFX, EZH2, GRHL3, ESR1, XBP1, NOTCH3, MAZ, SPI1
- Target gene symbol (double-evidenced CRMs): BTG3,CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000154639,
ENSG00000154640,
- Related loop:
chr21:16925000-16950000~~chr21:17375000-17400000,
chr21:17375000-17400000~~chr21:17500000-17525000,
chr21:17375000-17400000~~chr21:17550000-17575000,
chr21:17375000-17400000~~chr21:17575000-17600000,
chr21:17375000-17400000~~chr21:17775000-17800000,
chr21:17375000-17400000~~chr21:17825000-17850000,
chr21:17400000-17425000~~chr21:17500000-17525000,
chr21:17400000-17425000~~chr21:17550000-17575000,
chr21:17400000-17425000~~chr21:17575000-17600000,