- Basic information
- CohesinDB ID: CDBP00413933
- Locus: chr21-17418933-17419226
-
Data sourse: ENCSR054FKH, GSE72082, GSE68388
-
Cell type: HuCC-T1, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 88%,
"5_TxWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOSL1, PGR, HMG20A, ZNF660, SOX2, FOXA1, ZFHX2, ATF3, PRDM1, ZNF629, TEAD1, SNAI2, ESR1, OCA2, JUN, CTCF, EP300, SOX5, SOX6, E2F1, TEAD4, FOXA3, ZNF175, GATAD2A, PDX1, TFAP2C, POU2F2, CHD8, BRD3, SRF, SAP130, HIC1, ERG, ZBTB21, MYC, HOMEZ, GRHL3, NKX2-1, GABPA, STAT3, XRCC5, RCOR1, ZNF750, NR3C1, CEBPB, CREB1, EZH2, GABPB1, ZHX2, SPI1, EHF, GATA2, ZNF644, FLI1, NFIL3, ATF1, ETV5, CEBPA, SOX13, ZFX, SMAD3, RUNX2, GATA4, ZNF184, PBX4, ARNT, ATF2, PRDM9, PBX3, FOS, CDK8, MED1, TEAD3, CEBPD, NR1H2, BCL11A, HNF4A, ATF7, FOXP1, ETV4, ZNF394, PPARG, FOXA2, CREM, CHD2, RELA, JUNB, HIF1A, GATA3, BATF, TAL1, MAX, CEBPG, SP7, NFKB1, ELF3, BHLHE40, AR, RXR, ZNF366, BRD4, JUND, ZNF440, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): BTG3,CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops