- Basic information
- CohesinDB ID: CDBP00413937
- Locus: chr21-17429707-17430271
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Data sourse: ENCSR167MTG, GSE72082, GSE76893, GSE62063, ENCSR054FKH, GSE25021
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Cell type: Hep-G2, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"5_TxWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, SMC1A, TBL1X, EBF1, ZFX, XBP1, ZNF317, FOXA1, ERG, YY1, RELA, MYC, RAD21, ARNT, HIF1A, PROX1, OTX2, VDR, KLF5, EZH2, ESR1, OCA2, CTCF, ARRB1, SPI1, GSPT2, AR, EGLN2, NOTCH3, NCOR2, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): C21orf91,CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops