- Basic information
- CohesinDB ID: CDBP00413942
- Locus: chr21-17442241-17442520
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Data sourse: ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 61%,
"7_Enh": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, FOSL1, PGR, HMG20A, SOX2, HNF1A, FOXA1, HLF, RBFOX2, RXRB, KDM3A, TFAP4, ATF3, NFIC, THRB, ZFP64, ZNF362, ZBTB44, PRDM1, CHD7, MXD4, ZNF189, TP63, CDX2, TEAD1, KLF6, KLF10, RCOR2, ESR1, ZNF561, JUN, BAF155, EP300, ZBTB20, MNT, SOX5, PAX8, SOX4, PRDM4, E2F4, RFX3, FOXA3, ZNF175, GATAD2A, RBPJ, MLX, TFAP2C, EED, NANOG, MYCN, POU5F1, TOP2A, ZBTB17, GATAD1, SAP130, ARID3A, TBP, ERG, ONECUT1, MYC, SMARCA4, HOMEZ, RAD21, RXRA, GABPA, STAT3, ZNF614, XRCC5, NKX3-1, SOX10, MIER3, RCOR1, NR2F6, NR3C1, CEBPB, ESRRA, ZNF750, CREB1, TBL1XR1, GRHL2, FEZF1, ZNF652, GABPB1, SPI1, MIXL1, TFE3, HBP1, HDAC2, GATA2, SSRP1, ZNF644, DRAP1, ZGPAT, NFIL3, ETV5, RUNX1, THAP11, BCL6, SMC1A, CEBPA, SOX13, AFF4, SMAD3, ZFP37, SP5, SMARCC1, PRDM10, RARA, ZNF384, NOTCH1, ZNF35, NFYC, ZSCAN30, GATA4, OSR2, PBX4, ARNT, ZNF48, SMAD4, FOS, HMGXB4, TGIF2, MED1, TEAD3, CEBPD, PIAS1, ZMYM3, ZNF3, NR1H2, MBD1, MAFK, SP1, HNF4A, IKZF5, REST, ARID1A, ARID2, ASH2L, PHIP, FOXP1, PRDM6, SMC3, ELL2, NCOR2, ZNF34, ZNF394, SKI, PPARG, FOXA2, CREM, MIER2, MAFF, WT1, ZBTB33, TCF7, CDK9, HOXB13, ZNF580, KDM1A, YY1, RELA, JUNB, BRG1, ZIC2, HIF1A, TCF4, OTX2, GATA3, MAX, TLE3, CEBPG, KLF4, SP7, NR2F2, TCF7L2, KDM5B, ZBTB6, ELF3, PHF5A, KAT8, ARRB1, ARID4B, NFKBIZ, AR, ZNF324, ZNF366, ZBTB26, NCOR1, BRD4, JUND, SCRT1, ZNF24, DMAP1
- Target gene symbol (double-evidenced CRMs): CXADR,C21orf91
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops