Deatailed information for cohesin site CDBP00413943


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  • Basic information
  • CohesinDB ID: CDBP00413943
  • Locus: chr21-17443841-17444029
  • Data sourse: GSE120943, ENCSR230ZWH, GSE98367
  • Cell type: Liver, Monocytes, Macrophage
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 1% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.967
  • Subunit: Rad21,SMC1
  • CTCF binding site: non-CTCF CTCF motif: False
  • Genomic location: Intragenic
  • 3D genome
  • TAD boundary: non-Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
  • Compartment: 47% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): True
  • Chromatin annotation: "15_Quies": 80%, "5_TxWk": 7%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: RUNX1, ZBTB2, CEBPB, DDX5, TOP2A, SOX2, MCM3, NME2, ARNT, GRHL3, ATF4, GABPA, STAT3, ZSCAN4
  • Target gene symbol (double-evidenced CRMs): C21orf91,CXADR
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 0
  • Number of somatic mutations (non-coding): 0
  • Related genes and loops

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